qp.manager.create

Manager for submitting DFT single point calcultions.

Functions

compress_sequence

Condense a list of atom indices into range notation for TeraChem constraints.

create_jobs

Generate QM job input files for all extracted clusters.

find_heavy

Find heavy (non-hydrogen) atom indices for geometry optimization constraints.

get_charge

Extract total charge and extra spin from charge.csv and spin.csv.

get_electronic

Retrieve oxidation state and spin multiplicity from the input CSV.

ligand_in_spheres

Check whether a ligand is present in any of the sphere PDB files.

residue_exists

Check whether a specific residue exists in a PDB file.