Getting Started
Getting Started
Quickstart
User Guide
Pipeline Overview
Input Formats
Configuration Reference
CLI Reference
Output Structure
Reference
API Documentation
qp.structure
qp.protonate
qp.cluster
qp.cluster.charge_count
qp.cluster.spheres
qp.cluster.spheres.box_outlier_thres
qp.cluster.spheres.build_heavy
qp.cluster.spheres.build_hydrogen
qp.cluster.spheres.calc_dist
qp.cluster.spheres.cap_chains
qp.cluster.spheres.check_NC
qp.cluster.spheres.check_atom_valence
qp.cluster.spheres.check_disulfide
qp.cluster.spheres.complete_oligomer
qp.cluster.spheres.compute_charge
qp.cluster.spheres.count_residues
qp.cluster.spheres.extract_clusters
qp.cluster.spheres.fill_dummy
qp.cluster.spheres.format_plot
qp.cluster.spheres.get_center_residues
qp.cluster.spheres.get_grid
qp.cluster.spheres.get_grid_coord_idx
qp.cluster.spheres.get_next_neighbors
qp.cluster.spheres.get_normalized_vector
qp.cluster.spheres.make_res_key
qp.cluster.spheres.merge_centers
qp.cluster.spheres.plot_voronoi_2d
qp.cluster.spheres.prune_atoms
qp.cluster.spheres.residue_in_ligands
qp.cluster.spheres.scale_hydrogen
qp.cluster.spheres.visualize_dummy
qp.cluster.spheres.voronoi
qp.cluster.spheres.write_pdbs
qp.cluster.spheres.CenterResidue
qp.cluster.spheres_bad
qp.cluster.struct_to_file
qp.manager
qp.analyze
qp.cli
FAQ & Troubleshooting
Citation
quantumPDB
⁄
API Documentation
⁄
qp.cluster
⁄
qp.cluster.spheres
⁄
qp.cluster.spheres.format_plot
qp.cluster.spheres.format_plot
¶
qp.cluster.spheres.
format_plot
(
)
→
None
[source]
¶
General plotting parameters for the Kulik Lab.